Combined burden and functional impact tests for cancer driver discovery using DriverPower
- Creator: Shuai, Shimin , Abascal, Federico , Carlevaro-Fita, Joana , Chakravarty, Dimple , Chan, Calvin Wing Yiu , Chen, Ken , Choi, Jung Kyoon , Deu-Pons, Jordi , Dhingra, Priyanka , Diamanti, Klev , Feuerbach, Lars , Fink, J. Lynn , Amin, Samirkumar B. , Scarlett, Christopher J. , Frigola, J , Gambacorti-Passerini, C , Garsed, DW , Getz, G , Guo, Q , Gut, IG , Bader, Gary D. , Bandopadhayay, Pratiti , Beroukhim, Rameen , Bertl, Johanna , Boroevich, Keith A. , Brunak, Søren , Campbell, Peter J.
- Resource Type: journal article
- Date: 2020
Inferring structural variant cancer cell fraction
- Creator: Cmero, Marek , Yuan, Ke , Cao, Shaolong , Scarlett, Christopher J. , Christie, Elizabeth L. , Cun, Yupeng , Dawson, Kevin J. , Demeulemeester, Jonas , Dentro, Stefan C. , Deshwar, Amit G. , Donmez, Nilgun , Drews, Ruben M. , Eils, Roland , Ong, Cheng Soon , Fan, Y , Fittall, MW , Garsed, DW , Gerstung, M , Getz, G , Gonzalez, S , Ha, G , Haase, K , Imielinski, M , Jerman, L , Schröder, Jan , Ji, Y , Jolly, C , Kleinheinz, K , Lee, J , Lee-Six, H , Leshchiner, I , Livitz, D , Malikic, S , Martincorena, I , Mitchell, TJ , Adams, David J. , Morris, QD , Mustonen, V , Oesper, L , Peifer, M , Peto, M , Raphael, BJ , Rosebrock, D , Rubanova, Y , Sahinalp, SC , Salcedo, A , Anur, Pavana , Schlesner, M , Schumacher, SE , Sengupta, S , Shi, R , Shin, SJ , Spellman, PT , Spiro, O , Stein, LD , Tarabichi, M , Van Loo, P , Beroukhim, Rameen , Vembu, S , Vázquez-García, I , Wang, W , Wedge, DC , Wheeler, DA , Wintersinger, JA , Yang, TP , Yao, X , Yu, K , Zhu, H , Boutros, Paul C. , Corcoran, NM , Papenfuss, T , Hovens, CM , Markowetz, F , Macintyre, G , Aaltonen, LA , Abascal, F , Abeshouse, A , Aburatani, H , Adams, DJ , Bowtell, David D. L. , Agrawal, N , Ahn, KS , Ahn, SM , Aikata, H , Akbani, R , Akdemir, KC , Al-Ahmadie, H , Al-Sedairy, ST , Al-Shahrour, F , Alawi, M , Campbell, Peter J. , Albert, M , Aldape, K , Alexandrov, LB , Ally, A , Alsop, K , Alvarez, EG , Amary, F , Amin, SB , Aminou, B , Ammerpohl, O
- Resource Type: journal article
- Date: 2020
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
- Creator: Bailey, Matthew H. , Perry, MD , Puiggros, M , Raine, KM , Rheinbay, E , Royo, R , Sahinalp, SC , Saksena, G , Sarrafi, I , Schlesner, M , Simpson, JT , Stebbings, L , Stewart, C , Stobbe, MD , Teague, JW , Tiao, G , Torrents, D , Wala, JA , Wang, J , Wang, W , Waszak, SM , Weischenfeldt, J , Wendl, MC , Werner, J , Wu, Z , Xue, H , Yakneen, S , Yamaguchi, TN , Ye, K , Yellapantula, VD , Yung, CK , Zhang, J , Pedersen, JS , Puiggròs, M , Wendl, M , Ellrot, K , Wheeler, DA , Getz, G , Gerstein, MB , Ding, L , Aaltonen, LA , Abascal, F , Abeshouse, A , Aburatani, H , Adams, DJ , Agrawal, N , Ahn, KS , Ahn, S-M , Aikata, H , Akbani, R , Akdemir, KC , Al-Ahmadie, H , Al-Sedairy, ST , Al-Shahrour, F , Alawi, M , Albert, M , Aldape, K , Alexandrov, LB , Ally, A , Alsop, K , Alvarez, EG , Amary, F , Amin, SB , Aminou, B , Ammerpohl, O , Anderson, MJ , Ang, Y , Antonello, D , Anur, P , Aparicio, S , Meyerson, William U. , Bailey, MH , Buchanan, A , Chiotti, K , Covington, K , Creason, A , Ellrott, K , Fan, Y , Foltz, S , Dursi, Lewis Jonathan , Hale, W , Haussler, D , Hess, JM , Hutter, CM , Kandoth, C , Kasaian, K , Kasapi, M , Larson, D , Leshchiner, I , Wang, Liang-Bo , Letaw, J , Ma, S , McLellan, MD , Men, Y , Mills, GB , Niu, B , Peto, M , Radenbaugh, A , Reynolds, SM , Dong, Guanlan , Sofia, H , Struck, AJ , Stuart, JM , Weinstein, JN , Wong, CK , Xi, L , Liang, Wen-Wei , Bieg, M , Boutros, PC , Buchhalter, I , Butler, AP , Chen, K , Chong, Z , Drechsel, O , Weerasinghe, Amila , Jonathan Dursi, L , Eils, R , Espiritu, SMG , Fulton, RS , Gao, S , Gelpi, JLL , Gonzalez, S , Li, Shantao , Gut, IG , Hach, F , Heinold, MC , Hinton, J , Hu, T , Huang, V , Huang, Y , Hutter, B , Jones, DR , Kelso, Sean , Jung, J , Jäger, N , Kim, HL , Kleinheinz, K , Kumar, S , Kumar, Y , Lalansingh, CM , Letunic, I , Livitz, D , Ma, EZ , Maruvka, YE , Mashl, RJ , Menzies, A , Milovanovic, A , Nielsen, MM , Ossowski, S , Paramasivam, N , Scarlett, Christopher J.
- Resource Type: journal article
- Date: 2020